To change a previously inserted metadata tag, The inserted metadata tag will appear in green. You can insert a previously defined metadata tag by either using: Images via Metadata module, you can name the folder using metadata For example, if you chooseĭefault Input Folder sub-folder, you can enter "./MyFolder" to look in aįolder called "MyFolder" at the same level as the Default Input Folder.įor Elsewhere., Default Input Folder sub-folder andĭefault Output Folder sub-folder, if you have metadata associated with your Use two periods "." to move up one folder level.For example, if you chooseĭefault Input Folder sub-folder, you can enter "./MyFiles" to look in aįolder called "MyFiles" that is contained within the Default Input Folder. Use one period to represent the current directory.Relative path to specify the file location relative to a directory): You can use an absolute path (such as "C:\imagedir\image.tif" on a PC) or a The default output folder or a path that starts from the default output folder.Įlsewhere and the two sub-folder options all require you to enter an additional Default output directory sub-folder: Enter the name of a subfolder of.The default input folder or a path that starts from the default input folder. Default input directory sub-folder: Enter the name of a subfolder of.
Elsewhere.: Use a particular folder you specify.Default Output Folder: Use from the default output folder.Default Input Folder: Use the default input folder.You can choose among the following options which are common to all file input/output This setting lets you choose the folder for the output Here's an example table of the files that would be generated:Īvailable measurements For details on the nomenclature used by CellProfiler for the exported measurements, see Help > General Help > How Measurements Are Named. Using the same approach as above, select the metadata tag "Treatment2", and complete the filename by appending the text ".csv".Uncheck Use the object name for the file name?.In this instance, you would select the metadata tag "Treatment1" Right-click on the tag to display and select the available values.Use the up and down arrows to cycle through possible values.To change a previously inserted metadata tag, navigate the cursor to just before the tag and either: In Windows, the Context menu key, which is between the Windows key and Ctrl key.A right mouse button click inside the control.Insert the metadata tag of choice into the output path.
or Default Input/Output Folder sub-folder for the output file location. You can do this by specifying metadata tags for the folder name and file name: For instance, you might have applied two treatments to each of your samples and labeled them with the metadata names "Treatment1" and "Treatment2", and you might want to create separate files for each combination of treatments, storing all measurements with a given "Treatment1" in separate directories. This is controlled by the directory and file names that you enter. Using metadata tags for output ExportToSpreadsheet can write out separate files for groups of images based on their metadata tags. This module will convert the measurements to a comma-, tab-, or other character-delimited text format and save them to the hard drive in one or several files, as requested. Export To Spreadsheet exports measurements into one or more files that can be opened in Excel or other spreadsheet programs.
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